PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 411aa    MW: 45943.1 Da    PI: 4.8097
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5150genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058426123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              +kC+ C +sFs+   L  H+r+H
  Tp57577_TGAC_v2_mRNA5150  4 HKCKLCFRSFSNGKALGGHMRSH 26
                              79********************9 PP

2zf-C2H212.70.00037234256123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ykC  C+k+F++   L  H  +H
  Tp57577_TGAC_v2_mRNA5150 234 YKCDTCNKVFRSYQALGGHRASH 256
                               9***********99999998887 PP

3zf-C2H211.40.00099298320123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++Cp+C + Fs+   L  H rtH
  Tp57577_TGAC_v2_mRNA5150 298 HECPICFREFSSGQALGGHKRTH 320
                               79*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.49E-5331No hitNo description
SMARTSM003550.063426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.679431IPR007087Zinc finger, C2H2
PfamPF139124.0E-7427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PfamPF139126.7E-13233258IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-7233256No hitNo description
SMARTSM003550.014234256IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305234261IPR007087Zinc finger, C2H2
PROSITE patternPS000280236256IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-7293320No hitNo description
SMARTSM003550.23298320IPR015880Zinc finger, C2H2-like
PfamPF139123.4E-10298320IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432298320IPR007087Zinc finger, C2H2
PROSITE pattern